Stem-loop crm-mir-64b

Accession

MI0011126

Description

Caenorhabditis remanei crm-mir-64b precursor miRNA

Literature search

1 open access papers mention crm-mir-64b
(18 sentences)

Sequence

75817 reads, 697.0 reads per million, 9 experiments

ggggccucgccgauCAUGACACUCAAGCAUACCAUGGAcugacuuucagcagaaucCAUGUAUGGUUAGUGUUAUCAucggcgagugccccc
((((((((((((((.((((((((.((.(((((.((((((((........)))..)))))))))).)))))))))).))))))))).))))).

Structure

-     -         C        C  G     C     --   acu 
 ggggc cucgccgau AUGACACU AA CAUAC AUGGA  cug   u
 ||||| ||||||||| |||||||| || ||||| |||||  |||    
 ccccg gagcggcuA UAUUGUGA UU GUAUG UACcu  gac   u
c     u         C        -  G     -     aa   gac 

Annotation confidence High

Genome context

Crem_Contig41: 72225-72316 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from crm-mir-64b

Mature crm-miR-64b-5p

• Accession: MIMAT0011637
• Description: Caenorhabditis remanei crm-miR-64b-5p mature miRNA
• Sequence: 15 - CAUGACACUCAAGCAUACCAUGGA - 38
• Evidence: experimental ; 454 [1]

Mature crm-miR-64b-3p

• Accession: MIMAT0011638
• Description: Caenorhabditis remanei crm-miR-64b-3p mature miRNA
• Sequence: 57 - CAUGUAUGGUUAGUGUUAUCA - 77
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074