Accession
MI0011162
Description
Pristionchus pacificus
ppc-mir-2258 precursor miRNA
Sequence
6552
reads,
582.0
reads per million, 12 experiments
ucucucucugaucucaaucgggaguuCCGGUUUCGUUGGUGUCUAUCUCUacagaagguugaAAUGACACCAAAGCGAAACCGCaauuccccuugaguagauguaguugag
......((((..(((((..(((((((.((((((((((((((((.((.((.((.....)).)).)))))))))..))))))))).))))))).)))))))))..........
......((((..(((((..(((((((.((((((((((((((((.((.((.((.....)).)).)))))))))..))))))))).))))))).)))))))))..........
Structure
----ucucuc au uc C -- U C U a
ucug cucaa gggaguu CGGUUUCGU UGGUGUC AU UC ac g
|||| ||||| ||||||| ||||||||| ||||||| || || || a
agau gaguu cccuuaa GCCAAAGCG ACCACAG UA ag ug a
gaguugaugu -- -c C AA - A u g
Annotation confidence
High
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Genome context
ABKE03000092.1: 345785-345895 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppc-mir-2258
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppc-miR-2258-5p
| Accession | MIMAT0056932 |
| Description | Pristionchus pacificus ppc-miR-2258-5p mature miRNA |
| Sequence | 27 - CCGGUUUCGUUGGUGUCUAUCUCU - 50 |
| Evidence |
experimental
454 [1] |
Mature ppc-miR-2258-3p
| Accession | MIMAT0011669 |
| Description | Pristionchus pacificus ppc-miR-2258-3p mature miRNA |
| Sequence | 63 - AAUGACACCAAAGCGAAACCGC - 84 |
| Evidence |
experimental
454 [1] |
References
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