Stem-loop ppc-mir-81

Accession

MI0011148

Description

Pristionchus pacificus ppc-mir-81 precursor miRNA mir-81

Gene
family

RF00728; mir-81

Literature search

2 open access papers mention ppc-mir-81
(2 sentences)

Sequence

1976944 reads, 110405.0 reads per million, 12 experiments

ucacucccggcaugCGGUUUUCACGUUGAUCUGAGAgcuaaucgauauguuucUGAGAUCAUAGUGAAAGCUACUugccgaaguga
(((((..(((((.(.(((((((((..((((((.(((((..........).)))).))))))..))))))))).).))))).)))))

Structure

     cc     u C         GU      G    - uaau 
ucacu  cggca g GGUUUUCAC  UGAUCU AGAg c    c
|||||  ||||| | |||||||||  |||||| |||| |     
aguga  gccgu C UCGAAAGUG  ACUAGA Ucuu g    g
     -a     U A         AU      G    u uaua 

Annotation confidence High

Genome context

ABKE03000007.1: 508615-508700 [-]

Mature ppc-miR-81-5p

• Accession: MIMAT0056925
• Description: Pristionchus pacificus ppc-miR-81-5p mature miRNA
• Sequence: 15 - CGGUUUUCACGUUGAUCUGAGA - 36
• Evidence: experimental ; 454 [1]

Mature ppc-miR-81-3p

• Accession: MIMAT0011656
• Description: Pristionchus pacificus ppc-miR-81-3p mature miRNA
• Sequence: 54 - UGAGAUCAUAGUGAAAGCUACU - 75
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074