Stem-loop crm-mir-58a

Accession

MI0011064

Description

Caenorhabditis remanei crm-mir-58a precursor miRNA

Sequence

17174 reads, 152.0 reads per million, 9 experiments

ccguuugaugcucgccauaucccauUGCCCUACUAUUCGCAUCUCAUCacuuccuccaguaauauaaggaUGAGAUCGUUUCAGUACGGCAAUggaaagagcuauauaacg
.((((..((((((........((((((((.(((((..((.((((((((.(((.............)))))))))))))..).)))).))))))))...)))).))..))))

Structure

c    ug  -    gccauauc        C    - UU  C        a   ccucc 
 cguu  au gcuc        ccauUGCC UACU A  CG AUCUCAUC cuu     a
 ||||  || ||||        |||||||| |||| |  || |||||||| |||     g
 gcaa  ua cgag        ggUAACGG AUGA U  GC UAGAGUag gaa     u
-    ua  u    -----aaa        C    C UU  -        -   uauaa 

Annotation confidence High

Genome context

Crem_Contig6993: 41-151 [+]

Mature crm-miR-58a-5p

• Accession: MIMAT0011545
• Description: Caenorhabditis remanei crm-miR-58a-5p mature miRNA
• Sequence: 26 - UGCCCUACUAUUCGCAUCUCAUC - 48
• Evidence: experimental ; 454 [1]

Mature crm-miR-58a-3p

• Accession: MIMAT0056863
• Description: Caenorhabditis remanei crm-miR-58a-3p mature miRNA
• Sequence: 71 - UGAGAUCGUUUCAGUACGGCAAU - 93
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074