Stem-loop ppc-mir-2241c

Accession

MI0011249

Description

Pristionchus pacificus ppc-mir-2241c precursor miRNA

Sequence

204 reads, 14.0 reads per million, 11 experiments

gcucuauucgauacgccucugAUCUUCAGGAUCCCUGUCUGAACAcagaaauugagugUUCACAAGGUUUCCUCAAGAUCagggcuucgagucagcu
(((..((((((...(((.((((((((.((((..(((...(((((((.........)))))))..)))..)))).))))))))))).)))))).))).

Structure

-   cu      uac   u        C    UC   GUC       aga 
 gcu  auucga   gcc cugAUCUU AGGA  CCU   UGAACAc   a
 |||  ||||||   ||| |||||||| ||||  |||   |||||||   a
 cga  ugagcu   cgg gaCUAGAA UCCU  GGA   ACUUgug   u
u   -c      --u   -        C    UU   -AC       agu 

Annotation confidence High

Genome context

ABKE03000012.1: 4725036-4725132 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-2241c

Mature ppc-miR-2241c-5p

• Accession: MIMAT0056980
• Description: Pristionchus pacificus ppc-miR-2241c-5p mature miRNA
• Sequence: 22 - AUCUUCAGGAUCCCUGUCUGAACA - 45
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2241c-3p

• Accession: MIMAT0011738
• Description: Pristionchus pacificus ppc-miR-2241c-3p mature miRNA
• Sequence: 59 - UUCACAAGGUUUCCUCAAGAUC - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074