Stem-loop crm-mir-252

Accession

MI0011052

Description

Caenorhabditis remanei crm-mir-252 precursor miRNA

Literature search

1 open access papers mention crm-mir-252
(1 sentences)

Sequence

26152 reads, 241.0 reads per million, 9 experiments

ggucucuuucaguuAUAAGUAGUAGUGCCGCAGGUaaccacucaaauauaugguuuACCUACUGCCUUCUGCUUAGAAuugaaauaucgaugaccg
((((((((((((((.(((((((.((.((.(.(((((((((..........))).)))))).).)))).))))))).))))))))....)).)))).

Structure

-    -  ----        A       U  U  C C      -   cuca 
 gguc uc    uuucaguu UAAGUAG AG GC G AGGUaa cca    a
 |||| ||    |||||||| ||||||| || || | |||||| |||     
 ccag ag    aaaguuAA AUUCGUC UC CG C UCCAuu ggu    a
g    u  cuau        G       U  -  U A      u   auau 

Annotation confidence High

Genome context

Crem_Contig1: 1805698-1805793 [+]

Mature crm-miR-252-5p

• Accession: MIMAT0011534
• Description: Caenorhabditis remanei crm-miR-252-5p mature miRNA
• Sequence: 15 - AUAAGUAGUAGUGCCGCAGGU - 35
• Evidence: experimental ; 454 [1]

Mature crm-miR-252-3p

• Accession: MIMAT0056855
• Description: Caenorhabditis remanei crm-miR-252-3p mature miRNA
• Sequence: 57 - ACCUACUGCCUUCUGCUUAGAA - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074