Stem-loop cbr-mir-35c-2

Accession

MI0010980

Description

Caenorhabditis briggsae cbr-mir-35c-2 precursor miRNA

Sequence

826999 reads, 59510.0 reads per million, 3 experiments

gacucgguccugCGCCACUUUCCACCGCGGUGAUAuuccaagcaaaacgguuaUCACCGGGUGAAAAUUGGUACagguccgaucc
((.((((.((((.((((.(((.((((.((((((((..((.........)).)))))))))))).))).)))).)))).)))))).

Structure

-  c    u    C    C   C    G        uu  aag 
 ga ucgg ccug GCCA UUU CACC CGGUGAUA  cc   c
 || |||| |||| |||| ||| |||| ||||||||  ||   a
 cu agcc ggaC UGGU AAA GUGG GCCACUau  gg   a
c  -    u    A    U   A    -        -u  caa 

Annotation confidence High

Genome context

chrX: 15375003-15375087 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from cbr-mir-35c-2

Mature cbr-miR-35c-2-5p

• Accession: MIMAT0053572
• Description: Caenorhabditis briggsae cbr-miR-35c-2-5p mature miRNA
• Sequence: 13 - CGCCACUUUCCACCGCGGUGAUA - 35
• Evidence: experimental ; 454 [1]

Mature cbr-miR-35c-3p

• Accession: MIMAT0011467
• Description: Caenorhabditis briggsae cbr-miR-35c-3p mature miRNA
• Sequence: 54 - UCACCGGGUGAAAAUUGGUAC - 74
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074