Stem-loop crm-mir-84

Accession

MI0011074

Description

Caenorhabditis remanei crm-mir-84 precursor miRNA

Sequence

8763 reads, 79.0 reads per million, 9 experiments

uacgaaacagucuaacagaagcaucUGAGGUAGUUUGUAAUGCUGUCGAcgcacuguaaugucuACAUCAUUUCAACUGCCUCGGCuguuuuuagacuuuuguuuugu
.(((((((((((((...((((((.(((((((((((.(.((((.(((.((((........)))).))).)))).)))))))))))).)))))))))))...))))))))

Structure

u        ---     aca      u           U U    C   C    cac 
 acgaaaca   gucua   gaagca cUGAGGUAGUU G AAUG UGU GAcg   u
 ||||||||   |||||   |||||| ||||||||||| | |||| ||| ||||    
 uguuuugu   cagau   uuuugu GGCUCCGUCAA C UUAC ACA cugu   g
-        uuu     ---      C           - U    U   u    aau 

Annotation confidence High

Genome context

Crem_Contig45: 340217-340324 [+]

Mature crm-miR-84-5p

• Accession: MIMAT0011559
• Description: Caenorhabditis remanei crm-miR-84-5p mature miRNA
• Sequence: 26 - UGAGGUAGUUUGUAAUGCUGUCGA - 49
• Evidence: experimental ; 454 [1]

Mature crm-miR-84-3p

• Accession: MIMAT0011560
• Description: Caenorhabditis remanei crm-miR-84-3p mature miRNA
• Sequence: 65 - ACAUCAUUUCAACUGCCUCGGC - 86
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074