Stem-loop cbr-mir-35b-9

Accession

MI0010997

Description

Caenorhabditis briggsae cbr-mir-35b-9 precursor miRNA

Sequence

ggucugggucggaccuccgcuguuuuucuccgcggugauacuccaaagaaagucguuaUCACCGGGUGAAAACUGGUAGAGguccgauucagucggacca
(((((((((((((((((.((((.(((((.((.((((((((................)))))))))).))))).)))).))))))))))....))))))).

Structure

-       ----          c    u     u  g        cuccaaa 
 ggucugg    gucggaccuc gcug uuuuc cc cggugaua       g
 |||||||    |||||||||| |||| ||||| || ||||||||        
 ccaggcu    uagccugGAG UGGU AAAAG GG GCCACUau       a
a       gacu          A    C     U  -        ugcugaa 

Annotation confidence Not enough data

Genome context

chrX: 15373162-15373261 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from cbr-mir-35b-9

Mature cbr-miR-35b

• Accession: MIMAT0011483
• Description: Caenorhabditis briggsae cbr-miR-35b mature miRNA
• Sequence: 59 - UCACCGGGUGAAAACUGGUAGAG - 81
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074