Stem-loop crm-mir-35f

Accession

MI0011030

Description

Caenorhabditis remanei crm-mir-35f precursor miRNA

Sequence

37751 reads, 362.0 reads per million, 9 experiments

auugcacuugacgacgggaacagUGCUGAUGCCGACCUUGGUAAUAggacuaaacugugacaagcuaUCACCGGGUGGGCAUUGGUUCUggucccuuagucauccuauugugau
((((((..((((...((((.(((.(((((((((.((((.(((.((((.................)))).))))))).))))))))).))).))))...))))......))))))

Structure

      ----cu    gac    a   U         G    U   A    gacuaaa 
auugca      ugac   ggga cag GCUGAUGCC ACCU GGU AUAg       c
||||||      ||||   |||| ||| ||||||||| |||| ||| ||||       u
uagugu      acug   cccu gUC UGGUUACGG UGGG CCA Uauc       g
      uauccu    auu    g   U         G    -   C    gaacagu 

Annotation confidence High

Genome context

Crem_Contig93: 223206-223319 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35f

Mature crm-miR-35f-5p

• Accession: MIMAT0056835
• Description: Caenorhabditis remanei crm-miR-35f-5p mature miRNA
• Sequence: 24 - UGCUGAUGCCGACCUUGGUAAUA - 46
• Evidence: experimental ; 454 [1]

Mature crm-miR-35f-3p

• Accession: MIMAT0011514
• Description: Caenorhabditis remanei crm-miR-35f-3p mature miRNA
• Sequence: 68 - UCACCGGGUGGGCAUUGGUUCU - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074