Stem-loop ppc-mir-2238e

Accession

MI0011223

Description

Pristionchus pacificus ppc-mir-2238e precursor miRNA

Sequence

8568 reads, 1056.0 reads per million, 11 experiments

gguaccuagucuuuucucuuucCCGUUCACUCUUCUCGUCAGUCGaugaucgaauauagAAUGACAGAACAGUGCGCGAGaaggaagacuagcuucc
((...(((((((....((((((.(((.((((.((((.((((.((..............)).)))))))).)))).))).)))))))))))))...))

Structure

  uac       uuuc      C   U    C    C    G  Gaugau 
gg   cuagucu    ucuuuc CGU CACU UUCU GUCA UC      c
||   |||||||    |||||| ||| |||| |||| |||| ||       
cc   gaucaga    aggaaG GCG GUGA AAGA CAGU Ag      g
  uuc       ----      A   C    C    -    A  auauaa 

Annotation confidence High

Genome context

ABKE03000048.1: 273544-273640 [-]

Mature ppc-miR-2238e-5p

• Accession: MIMAT0056965
• Description: Pristionchus pacificus ppc-miR-2238e-5p mature miRNA
• Sequence: 23 - CCGUUCACUCUUCUCGUCAGUCG - 45
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2238e-3p

• Accession: MIMAT0011719
• Description: Pristionchus pacificus ppc-miR-2238e-3p mature miRNA
• Sequence: 60 - AAUGACAGAACAGUGCGCGAG - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074