Stem-loop ppc-mir-2267

Accession

MI0011207

Description

Pristionchus pacificus ppc-mir-2267 precursor miRNA

Sequence

1341 reads, 86.0 reads per million, 8 experiments

auccuccucccuuuccucgggccgucUAGGGUACGCCCCCGCAAGCUUagcgcauugaaugaaggcuaAGCUGCGAGCGUCGUUCUCUGAauggcugaggagacgagagagagau
...(((((((.(((((((((.((((.(((((.((((.(.((((.(((((((.............))))))))))).).).))).))))).))))))))))))).).))).)))..

Structure

auc   -   - c         g    c     U   - C C    A       gcauu 
   cuc cuc c uuuccucgg ccgu UAGGG ACG C C CGCA GCUUagc     g
   ||| ||| | ||||||||| |||| ||||| ||| | | |||| |||||||     a
   gag gag g agaggaguc ggua GUCUC UGC G G GCGU CGAaucg     a
-ua   a   a c         -    A     U   U C A    -       gaagu 

Annotation confidence High

Genome context

ABKE03000073.1: 220769-220883 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-2267

Mature ppc-miR-2267-5p

• Accession: MIMAT0011704
• Description: Pristionchus pacificus ppc-miR-2267-5p mature miRNA
• Sequence: 27 - UAGGGUACGCCCCCGCAAGCUU - 48
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2267-3p

• Accession: MIMAT0056956
• Description: Pristionchus pacificus ppc-miR-2267-3p mature miRNA
• Sequence: 69 - AGCUGCGAGCGUCGUUCUCUGA - 90
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074