Stem-loop cbr-mir-35b-6

Accession

MI0010994

Description

Caenorhabditis briggsae cbr-mir-35b-6 precursor miRNA

Sequence

221789 reads, 18651.0 reads per million, 3 experiments

gacuggaucggaccucCGCUGGUUUUUCCCGCGGUGAUAuuccgaagcaagugguuaUCACCGGGUGAAAACUGGUAGAGguccgauccaguc
((((((((((((((((.((((((((((.((.((((((((..(((.......))).)))))))))).)))))))))).))))))))))))))))

Structure

                C          C  G        uu   aa 
gacuggaucggaccuc GCUGGUUUUU CC CGGUGAUA  ccg  g
|||||||||||||||| |||||||||| || ||||||||  |||  c
cugaccuagccugGAG UGGUCAAAAG GG GCCACUau  ggu  a
                A          U  -        -u   ga 

Annotation confidence High

Genome context

chrX: 15372684-15372776 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from cbr-mir-35b-6

Mature cbr-miR-35b-5p

• Accession: MIMAT0053575
• Description: Caenorhabditis briggsae cbr-miR-35b-5p mature miRNA
• Sequence: 17 - CGCUGGUUUUUCCCGCGGUGAUA - 39
• Evidence: experimental ; 454 [1]

Mature cbr-miR-35b-3p

• Accession: MIMAT0011483
• Description: Caenorhabditis briggsae cbr-miR-35b-3p mature miRNA
• Sequence: 58 - UCACCGGGUGAAAACUGGUAGAG - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074