Stem-loop ppc-mir-236

Accession

MI0011165

Description

Pristionchus pacificus ppc-mir-236 precursor miRNA

Literature search

2 open access papers mention ppc-mir-236
(2 sentences)

Sequence

971 reads, 126.0 reads per million, 12 experiments

guggaagucaagacgagaCGUCUUACACGACACGUAUUGGAgugagucccccguccaggggacacuaaauaugcaucUAAUACUGUCAUGUAAUGACUUCucgcgacucaucuau
(((((((((..(.(((((.((((((((.((((.(((((((((((.((((((......)))))).).......)).)))))))))))).))))).))).))))))))))..)))))

Structure

     --    aa a     C   -     C    C        -  ------- a      cg 
gugga  aguc  g cgaga GUC UUACA GACA GUAUUGGA gu       g gucccc  u
|||||  ||||  | ||||| ||| ||||| |||| |||||||| ||       | ||||||   
uaucu  ucag  c gcuCU CAG AAUGU CUGU CAUAAUcu cg       c cagggg  c
     ac    -- -     U   U     A    -        a  uauaaau a      ac 

Annotation confidence High

Genome context

ABKE03000012.1: 103807-103921 [+]

Mature ppc-miR-236-5p

• Accession: MIMAT0056935
• Description: Pristionchus pacificus ppc-miR-236-5p mature miRNA
• Sequence: 19 - CGUCUUACACGACACGUAUUGGA - 41
• Evidence: experimental ; 454 [1]

Mature ppc-miR-236-3p

• Accession: MIMAT0011672
• Description: Pristionchus pacificus ppc-miR-236-3p mature miRNA
• Sequence: 78 - UAAUACUGUCAUGUAAUGACUUC - 100
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074