Stem-loop ppc-mir-2243

Accession

MI0011209

Description

Pristionchus pacificus ppc-mir-2243 precursor miRNA

Sequence

43247 reads, 1874.0 reads per million, 12 experiments

gcccucucgauacgcucccucAUCCACAGAAAUUCGUUCUCAUCacgauucgaagugaUGAUAAUGAAUUCUUUGGAUGagagcucuugagucugc
((...(((((...((((..(((((((.((((.((((((.(((((((........))))))).)))))))))).)))))))))))..)))))...))

Structure

  ccu     uac    cc       C    A      C       gau 
gc   cucga   gcuc  ucAUCCA AGAA UUCGUU UCAUCac   u
||   |||||   ||||  ||||||| |||| |||||| |||||||    
cg   gaguu   cgag  aGUAGGU UCUU AAGUAA AGUagug   c
  ucu     -cu    --       U    -      U       aag 

Annotation confidence High

Genome context

ABKE03000012.1: 5532389-5532484 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-2243

Mature ppc-miR-2243-5p

• Accession: MIMAT0056957
• Description: Pristionchus pacificus ppc-miR-2243-5p mature miRNA
• Sequence: 22 - AUCCACAGAAAUUCGUUCUCAUC - 44
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2243-3p

• Accession: MIMAT0011706
• Description: Pristionchus pacificus ppc-miR-2243-3p mature miRNA
• Sequence: 59 - UGAUAAUGAAUUCUUUGGAUG - 79
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074