Stem-loop crm-mir-57

Accession

MI0011024

Description

Caenorhabditis remanei crm-mir-57 precursor miRNA

Literature search

1 open access papers mention crm-mir-57
(1 sentences)

Sequence

5081444 reads, 50750.0 reads per million, 9 experiments

uaaguuugaauaucucaugacuguuuucgucUACCCUGUAGAUCGAGCUGUGUGUuuugaaguguucauacACAAGCUAGACUGCAAGGUGAAcgacaaaaugagagagcuu
.((((((.....((((((...((...((((.((((.(((((.((.((((.(((((..((((...)))).))))))))).))))))).)))).))))))..))))))))))))

Structure

u      gaaua      gac  uuu    c    C     A  G    G     uu    g 
 aaguuu     ucucau   ug   ucgu UACC UGUAG UC AGCU UGUGU  ugaa  
 ||||||     ||||||   ||   |||| |||| ||||| || |||| |||||  |||| u
 uucgag     agagua   ac   agcA GUGG ACGUC AG UCGA ACAca  acuu  
-      -----      -aa  ---    A    A     -  A    -     -u    g 

Annotation confidence High

Genome context

Crem_Contig51: 436055-436166 [-]

Mature crm-miR-57-5p

• Accession: MIMAT0011509
• Description: Caenorhabditis remanei crm-miR-57-5p mature miRNA
• Sequence: 32 - UACCCUGUAGAUCGAGCUGUGUGU - 55
• Evidence: experimental ; 454 [1]

Mature crm-miR-57-3p

• Accession: MIMAT0056829
• Description: Caenorhabditis remanei crm-miR-57-3p mature miRNA
• Sequence: 72 - ACAAGCUAGACUGCAAGGUGAA - 93
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074