Stem-loop crm-mir-259

Accession

MI0011104

Description

Caenorhabditis remanei crm-mir-259 precursor miRNA

Sequence

3002 reads, 27.0 reads per million, 9 experiments

agccgacggaacgaguAAAUCUCAUCCUAAUCUGGUUGACacaacacaaggaagugCUACCGAUUUGGCUUGGGAUUGACuuguggaaauggcu
(((((.....((((((.(((((((.((.((((.(((.(.(((...........)))).))))))).))..))))))).)))))).....)))))

Structure

     acgga      A       -U  U    U   U A   aaca 
agccg     acgagu AAUCUCA  CC AAUC GGU G Cac    c
|||||     |||||| |||||||  || |||| ||| | |||    a
ucggu     uguuCA UUAGGGU  GG UUAG CCA C gug    a
     aaagg      G       UC  U    -   U -   aagg 

Annotation confidence High

Genome context

Crem_Contig60: 205404-205497 [-]

Mature crm-miR-259-5p

• Accession: MIMAT0011607
• Description: Caenorhabditis remanei crm-miR-259-5p mature miRNA
• Sequence: 17 - AAAUCUCAUCCUAAUCUGGUUGAC - 40
• Evidence: experimental ; 454 [1]

Mature crm-miR-259-3p

• Accession: MIMAT0056874
• Description: Caenorhabditis remanei crm-miR-259-3p mature miRNA
• Sequence: 57 - CUACCGAUUUGGCUUGGGAUUGAC - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074