miRBase entry: cbr-mir-2222-2

Stem-loop cbr-mir-2222-2


Accession
MI0011007
Description
Caenorhabditis briggsae cbr-mir-2222-2 precursor miRNA


Sequence

caugaauggucagguuaccagucgaccugugcugccucuuucuuucgugauauuuuucacagcguaaaaaUAUCACAAGAACAGAUCCAGCACaggucguuuaccugacauuuau
.(((((((.((((((.......((((((((((((..((((((((..(((((((((((........)))))))))))))))).)))..))))))))))))...)))))))))))))

Structure
c       g      uaccagu            cc   -     uc           cac 
 augaaug ucaggu       cgaccugugcug  ucu uucuu  gugauauuuuu   a
 ||||||| ||||||       ||||||||||||  ||| |||||  |||||||||||    
 uauuuac agucca       gcuggaCACGAC  AGA AAGAA  CACUAUaaaaa   g
-       -      ----uuu            CU   C     --           ugc 


Annotation confidence Not enough data
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Genome context
chrX: 20537156-20537270 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cbr-mir-2222-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-2222

Accession MIMAT0011487
Description Caenorhabditis briggsae cbr-miR-2222 mature miRNA
Sequence 71 - UAUCACAAGAACAGAUCCAGCAC - 93
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074