Stem-loop crm-mir-249

Accession

MI0011047

Description

Caenorhabditis remanei crm-mir-249 precursor miRNA

Literature search

1 open access papers mention crm-mir-249
(1 sentences)

Sequence

204893 reads, 1840.0 reads per million, 9 experiments

uguuuucuacgugacuagcAACGCACAAAAGUUUCUGUgcgacaaauaugaaauuuugUCACAGGACUUUUGAGCGUUGCuaguugaaagaagau
.(((((((....((((((((((((.((((((((.((((..((((((........)))))))))))))))))).))))))))))))...)))))))

Structure

u       acgu            A        U    gc      uau 
 guuuucu    gacuagcAACGC CAAAAGUU CUGU  gacaaa   g
 |||||||    |||||||||||| |||||||| ||||  ||||||    
 uagaaga    uugauCGUUGCG GUUUUCAG GACA  CUguuu   a
-       -aag            A        -    --      uaa 

Annotation confidence Not enough data

Genome context

Crem_Contig0: 4287076-4287170 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from crm-mir-249

Mature crm-miR-249-5p

• Accession: MIMAT0056850
• Description: Caenorhabditis remanei crm-miR-249-5p mature miRNA
• Sequence: 20 - AACGCACAAAAGUUUCUGU - 38
• Evidence: experimental ; 454 [1]

Mature crm-miR-249-3p

• Accession: MIMAT0011529
• Description: Caenorhabditis remanei crm-miR-249-3p mature miRNA
• Sequence: 59 - UCACAGGACUUUUGAGCGUUGC - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074