Stem-loop ppc-mir-2241a-5

Accession

MI0011240

Description

Pristionchus pacificus ppc-mir-2241a-5 precursor miRNA

Sequence

163 reads, 9.0 reads per million, 9 experiments

auucgauacgccucugAUCUUCAGGAUCCCUGUCUGAACaucgaaauugagugUUCGCAAGGAUUCCUCAAGAUCagggccucgaauc
((((((...(((.((((((((.((((..(((...(((((((((....))).))))))..)))..)))).))))))))))).)))))).

Structure

-      uac   u        C    UC   GUC      -   a 
 auucga   gcc cugAUCUU AGGA  CCU   UGAACa ucg a
 ||||||   ||| |||||||| ||||  |||   |||||| |||  
 uaagcu   cgg gaCUAGAA UCCU  GGA   GCUUgu agu a
c      --c   -        C    UA   -AC      g   u 

Annotation confidence High

Genome context

ABKE03000012.1: 5240909-5240996 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppc-mir-2241a-5

Mature ppc-miR-2241a-5p

• Accession: MIMAT0056973
• Description: Pristionchus pacificus ppc-miR-2241a-5p mature miRNA
• Sequence: 17 - AUCUUCAGGAUCCCUGUCUGAAC - 39
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2241a-3p

• Accession: MIMAT0011731
• Description: Pristionchus pacificus ppc-miR-2241a-3p mature miRNA
• Sequence: 54 - UUCGCAAGGAUUCCUCAAGAUC - 75
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074