Stem-loop ppc-mir-2238a-3

Accession

MI0011195

Description

Pristionchus pacificus ppc-mir-2238a-3 precursor miRNA

Sequence

443 reads, 31.0 reads per million, 11 experiments

gguaacuagucgauccucuuucCCGUUCACUCUUCUCGUCAGUCGaugauugaauaucgAAUGACAGAUCAGUGCGCGAGaaggaagacuagcuucc
((...((((((..((((...((.(((.((((..(((.((((.((((((......)))))).)))))))..)))).))).)))))).))))))...))

Structure

  uaa      ga    cuu  C   U    CU   C    G      au 
gg   cuaguc  uccu   uc CGU CACU  UCU GUCA UCGaug  u
||   ||||||  ||||   || ||| ||||  ||| |||| ||||||   
cc   gaucag  agga   aG GCG GUGA  AGA CAGU Agcuau  g
  uuc      -a    ---  A   C    CU   -    A      aa 

Annotation confidence High

Genome context

ABKE03000093.1: 9309218-9309314 [+]

Mature ppc-miR-2238a-3-5p

• Accession: MIMAT0056947
• Description: Pristionchus pacificus ppc-miR-2238a-3-5p mature miRNA
• Sequence: 23 - CCGUUCACUCUUCUCGUCAGUCG - 45
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2238a-3p

• Accession: MIMAT0011692
• Description: Pristionchus pacificus ppc-miR-2238a-3p mature miRNA
• Sequence: 60 - AAUGACAGAUCAGUGCGCGAG - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074