miRBase entry: 16973872

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)

PubMed ID 16973872
Authors "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
Journal "Science
Volume 313
Pages 1596-1604

There are 164 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
ptc-MIR156a MI0002184 None CM000342.2 19089414 19089514 - -
ptc-MIR156b MI0002185 None CM000342.2 22869899 22869999 - -
ptc-MIR156c MI0002186 None CM000342.2 25766668 25766767 + -
ptc-MIR156d MI0002187 None None None -
ptc-MIR156e MI0002188 None None None -
ptc-MIR156f MI0002189 None None None -
ptc-MIR156g MI0002190 None CM000341.2 11875533 11875635 - -
ptc-MIR156h MI0002191 None CM000340.2 7938832 7938934 - -
ptc-MIR156i MI0002192 None CM000348.2 4332062 4332160 - -
ptc-MIR156j MI0002193 None CM000351.2 4013699 4013798 + -
ptc-MIR156k MI0002194 None CM000347.2 11956115 11956215 - -
ptc-MIR159a MI0002195 None CM000348.2 4086335 4086517 - -
ptc-MIR159b MI0002196 None CM000351.2 4261680 4261866 + -
ptc-MIR159d MI0002198 None CM000350.2 6603532 6603725 + -
ptc-MIR159e MI0002199 None CM000350.2 6601853 6602044 + -
ptc-MIR159c MI0002200 None None None -
ptc-MIR160a MI0002201 None CM000337.2 43414059 43414160 + -
ptc-MIR160b MI0002202 None CM000344.2 2253371 2253468 - -
ptc-MIR160c MI0002203 None CM000346.2 19585212 19585309 + -
ptc-MIR160d MI0002204 None CM000347.2 17793833 17793935 - -
ptc-MIR160e MI0002205 None CM000342.2 167623 167722 + -
ptc-MIR160f MI0002206 None CM000352.2 120174 120273 + -
ptc-MIR160g MI0002207 None CM000350.2 13103115 13103212 - -
ptc-MIR160h MI0002208 None CM000352.2 6921900 6921997 - -
ptc-MIR162a MI0002209 None CM000348.2 5079325 5079431 + -
ptc-MIR162b MI0002210 None CM000351.2 6727251 6727357 + -
ptc-MIR164a MI0002212 None CM000338.2 16570527 16570611 + -
ptc-MIR164b MI0002213 None CM000342.2 8032134 8032295 + -
ptc-MIR164c MI0002214 None CM000349.2 945053 945134 - -
ptc-MIR164d MI0002215 None CM000350.2 9081111 9081209 + -
ptc-MIR164e MI0002216 None CM000352.2 12933923 12934077 + -
ptc-MIR164f MI0002217 None CM000339.2 8307292 8307381 + -
ptc-MIR166a MI0002218 None CM000337.2 8837231 8837394 + -
ptc-MIR166b MI0002219 None CM000338.2 2744789 2744894 + -
ptc-MIR166c MI0002220 None CM000338.2 13513492 13513625 + -
ptc-MIR166d MI0002221 None CM000341.2 4841691 4841795 - -
ptc-MIR166e MI0002222 None CM000341.2 22785312 22785417 - -
ptc-MIR166f MI0002223 None CM000343.2 3117083 3117187 - -
ptc-MIR166g MI0002224 None CM000344.2 10886852 10886954 - -
ptc-MIR166h MI0002225 None CM000346.2 9569645 9569745 + -
ptc-MIR166i MI0002226 None CM000348.2 2466416 2466518 - -
ptc-MIR166j MI0002227 None CM000350.2 7398187 7398329 + -
ptc-MIR166k MI0002228 None CM000350.2 7412220 7412362 + -
ptc-MIR166l MI0002229 None CM000351.2 541777 541873 - -
ptc-MIR166m MI0002230 None CM000351.2 5751466 5751570 - -
ptc-MIR166n MI0002231 None CM000355.2 5666163 5666493 - -
ptc-MIR166o MI0002232 None CM000349.2 3705072 3705391 + -
ptc-MIR166p MI0002233 None CM000341.2 4841446 4841591 - -
ptc-MIR166q MI0002234 None CM000343.2 3116836 3116986 - -
ptc-MIR167a MI0002235 None CM000338.2 3062198 3062286 - -
ptc-MIR167b MI0002236 None CM000338.2 3064788 3064883 - -
ptc-MIR167c MI0002237 None CM000341.2 22458162 22458250 + -
ptc-MIR167d MI0002238 None CM000341.2 22447920 22448024 + -
ptc-MIR167e MI0002239 None CM000341.2 3575879 3575969 + -
ptc-MIR167f MI0002240 None CM000346.2 10015916 10016002 - -
ptc-MIR167g MI0002241 None CM000344.2 10561904 10561989 + -
ptc-MIR167h MI0002242 None CM000349.2 2408396 2408486 + -
ptc-MIR168a MI0002243 None CM000339.2 4412270 4412429 - -
ptc-MIR168b MI0002244 None CM000340.2 22942209 22942344 - -
ptc-MIR169a MI0002245 None CM000337.2 3089790 3089954 - -
ptc-MIR169aa MI0002246 None None None -
ptc-MIR169ab MI0002247 None CM000343.2 6018895 6019001 - -
ptc-MIR169ac MI0002248 None CM000341.2 6551950 6552055 + -
ptc-MIR169ad MI0002249 None CM000343.2 6019640 6019740 - -
ptc-MIR169ae MI0002250 None CM000346.2 7227918 7228024 + -
ptc-MIR169af MI0002251 None CM000341.2 6547979 6548085 - -
ptc-MIR169b MI0002252 None CM000349.2 4145219 4145331 + -
ptc-MIR169c MI0002253 None CM000355.2 4971659 4971760 - -
ptc-MIR169d MI0002254 None CM000342.2 5569290 5569400 - -
ptc-MIR169e MI0002255 None CM000344.2 5476416 5476581 + -
ptc-MIR169f MI0002256 None CM000353.2 12354617 12354855 + -
ptc-MIR169g MI0002257 None None None -
ptc-MIR169h MI0002258 None CM000342.2 26618429 26618546 + -
ptc-MIR169i MI0002259 None CM000337.2 31302443 31302565 - -
ptc-MIR169j MI0002260 None CM000337.2 31302159 31302295 - -
ptc-MIR169k MI0002261 None CM000339.2 16015779 16015981 - -
ptc-MIR169l MI0002262 None CM000353.2 7526169 7526311 - -
ptc-MIR169m MI0002263 None CM000353.2 7526473 7526591 - -
ptc-MIR169n MI0002264 None None None -
ptc-MIR169o MI0002265 None CM000337.2 15560467 15560570 - -
ptc-MIR169p MI0002266 None None None -
ptc-MIR169q MI0002267 None CM000337.2 27741711 27741825 + -
ptc-MIR169r MI0002268 None CM000351.2 12082579 12082697 + -
ptc-MIR169s MI0002269 None None None -
ptc-MIR169t MI0002270 None CM000342.2 5556636 5556743 - -
ptc-MIR169u MI0002271 None CM000351.2 12074209 12074330 + -
ptc-MIR169v MI0002272 None CM000345.2 7559813 7559922 + -
ptc-MIR169w MI0002273 None CM000337.2 27741955 27742063 + -
ptc-MIR169x MI0002274 None CM000343.2 6023427 6023544 - -
ptc-MIR169y MI0002275 None CM000341.2 6551729 6551851 + -
ptc-MIR169z MI0002276 None None None -
ptc-MIR171a MI0002277 None CM000340.2 764743 764846 + -
ptc-MIR171b MI0002278 None None None -
ptc-MIR171c MI0002279 None CM000342.2 4686630 4686733 - -
ptc-MIR171d MI0002280 None None None -
ptc-MIR171e MI0002281 None CM000337.2 31797187 31797280 - -
ptc-MIR171f MI0002282 None CM000338.2 908813 908942 + -
ptc-MIR171g MI0002283 None CM000348.2 11044609 11044708 + -
ptc-MIR171h MI0002284 None CM000351.2 11748061 11748160 + -
ptc-MIR171i MI0002285 None CM000341.2 7776851 7776985 + -
ptc-MIR172a MI0002287 None CM000344.2 1941920 1942048 + -
ptc-MIR172b MI0002288 None CM000345.2 1730120 1730259 - -
ptc-MIR172c MI0002289 None CM000346.2 19900042 19900169 - -
ptc-MIR172d MI0002290 None CM000337.2 24216475 24216656 + -
ptc-MIR172e MI0002291 None CM000345.2 4502775 4502907 + -
ptc-MIR172f MI0002292 None CM000340.2 21285184 21285344 + -
ptc-MIR172g MI0002293 None CM000346.2 18369999 18370141 - -
ptc-MIR172h MI0002294 None CM000344.2 3367114 3367256 + -
ptc-MIR172i MI0002295 None CM000344.2 2531029 2531153 + -
ptc-MIR319a MI0002296 None CM000337.2 7887933 7888120 - -
ptc-MIR319b MI0002297 None CM000339.2 13875330 13875514 + -
ptc-MIR319c MI0002298 None CM000349.2 15551280 15551475 + -
ptc-MIR319d MI0002299 None CM000355.2 15846565 15846757 + -
ptc-MIR319e MI0002300 None CM000348.2 4980083 4980274 - -
ptc-MIR319f MI0002301 None CM000349.2 8843265 8843466 + -
ptc-MIR319g MI0002302 None CM000355.2 10665338 10665541 + -
ptc-MIR319h MI0002303 None CM000351.2 7395415 7395609 + -
ptc-MIR319i MI0002304 None CM000342.2 24889057 24889145 + -
ptc-MIR390a MI0002305 None CM000337.2 27693951 27694069 + -
ptc-MIR390b MI0002306 None CM000342.2 7867985 7868090 + -
ptc-MIR390c MI0002307 None CM000345.2 7516332 7516454 + -
ptc-MIR390d MI0002308 None CM000352.2 12564435 12564540 + -
ptc-MIR393a MI0002309 None CM000344.2 3747076 3747160 + -
ptc-MIR393b MI0002310 None CM000346.2 17888037 17888120 - -
ptc-MIR393c MI0002311 None CM000351.2 13166756 13166862 + -
ptc-MIR394a MI0002313 None CM000338.2 831734 831880 - -
ptc-MIR394b MI0002314 None CM000341.2 24701276 24701422 + -
ptc-MIR395a MI0002315 None CM000338.2 14667284 14667509 + -
ptc-MIR395b MI0002316 None CM000342.2 7424410 7424507 + -
ptc-MIR395c MI0002317 None CM000342.2 8406701 8406801 + -
ptc-MIR395d MI0002318 None CM000342.2 8410822 8410922 + -
ptc-MIR395e MI0002319 None CM000352.2 13792278 13792390 - -
ptc-MIR395f MI0002320 None None None -
ptc-MIR395g MI0002321 None CM000352.2 13793446 13793547 + -
ptc-MIR395h MI0002322 None None None -
ptc-MIR395i MI0002323 None CM000352.2 13797871 13797972 + -
ptc-MIR395j MI0002324 None None None -
ptc-MIR396a MI0002325 None CM000342.2 4636167 4636289 + -
ptc-MIR396b MI0002326 None None None -
ptc-MIR396c MI0002327 None CM000339.2 15576014 15576115 + -
ptc-MIR396d MI0002328 None CM000342.2 4642885 4643050 - -
ptc-MIR396e MI0002329 None None None -
ptc-MIR396f MI0002330 None CM000342.2 25199401 25199527 - -
ptc-MIR396g MI0002331 None CM000343.2 6411634 6411801 - -
ptc-MIR397a MI0002332 None CM000347.2 4146730 4146849 + -
ptc-MIR397b MI0002333 None CM000340.2 2207873 2207986 + -
ptc-MIR397c MI0002334 None CM000340.2 2949324 2949394 - -
ptc-MIR398a MI0002335 None CM000346.2 15683184 15683292 + -
ptc-MIR398b MI0002336 None CM000337.2 26837928 26838012 - -
ptc-MIR398c MI0002337 None CM000345.2 6795749 6795845 - -
ptc-MIR399a MI0002338 None CM000340.2 4598194 4598313 - -
ptc-MIR399b MI0002339 None CM000340.2 4636054 4636179 + -
ptc-MIR399d MI0002341 None CM000340.2 4632342 4632455 - -
ptc-MIR399f MI0002343 None CM000340.2 4599656 4599756 + -
ptc-MIR399g MI0002344 None CM000340.2 4640161 4640254 - -
ptc-MIR399h MI0002345 None CM000348.2 13760890 13761021 - -
ptc-MIR399i MI0002346 None CM000348.2 13767450 13767557 - -
ptc-MIR399j MI0002347 None CM000347.2 7754550 7754661 + -
ptc-MIR399c MI0002348 None None None -
ptc-MIR399e MI0002349 None None None -
ptc-MIR403a MI0002350 None CM000338.2 15394788 15394919 + -
ptc-MIR403b MI0002351 None CM000346.2 14828054 14828153 - -
ptc-MIR408 MI0002352 None CM000338.2 14802196 14802300 + -
ptc-MIR403d MI0025470 None None None -



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