Stem-loop ptc-MIR403d

Accession

MI0025470

Description

Populus trichocarpa ptc-MIR403d precursor miRNA

Literature search

1 open access papers mention ptc-MIR403d
(1 sentences)

Sequence

609932 reads, 10229.0 reads per million, 9 experiments

aggcauaUUUCAGGUUUGUGCAUGAAUCUaauauagcuaaaaaaaucccaucaaacacaaauuaaaauacuagauagcaaucagcacuaguuuaguauaguaUUAGAUUCACGCACAAACUCGuaaucuguc
.((((.(((.(.(((((((((.((((((((((((.(((((............................(((((...((.....)).))))))))))...)))))))))))).))))))))).).))).))))

Structure

a    u   U A         A            --a     aaaaaucccaucaaacacaaauuaaaau     aua  a 
 ggca aUU C GGUUUGUGC UGAAUCUaauau   gcuaa                            acuag   gc a
 |||| ||| | ||||||||| ||||||||||||   |||||                            |||||   || u
 cugu uaa G UCAAACACG ACUUAGAUUaug   ugauu                            ugauc   cg c
-    c   u C         C            aua     ----------------------------     --a  a 

Annotation confidence Medium

Genome context

Unknown

Mature ptc-miR403d-5p

• Accession: MIMAT0055695
• Description: Populus trichocarpa ptc-miR403d-5p mature miRNA
• Sequence: 8 - UUUCAGGUUUGUGCAUGAAUCU - 29
• Evidence: experimental ; unknown

Mature ptc-miR403d-3p

• Accession: MIMAT0030370
• Description: Populus trichocarpa ptc-miR403d-3p mature miRNA
• Sequence: 103 - UUAGAUUCACGCACAAACUCG - 123
• Evidence: not_experimental

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


3. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604