Stem-loop ptc-MIR162a

Accession

MI0002209

Description

Populus trichocarpa ptc-MIR162a precursor miRNA

Literature search

3 open access papers mention ptc-MIR162a
(14 sentences)

Sequence

181396 reads, 3003.0 reads per million, 9 experiments

ugggaagacacuGGAGGCAGCGGUUCAUCGAUCUcuuccuggccaauuuuuuguuuagcacgaaaaacaugaaccgaUCGAUAAACCUCUGCAUCCAGcgcuuccuu
.((((((.(.(((((.((((.((((.(((((((..(((.((.....((((((((.....)))))))))).)))..))))))).)))).)))).))))).))))))).

Structure

u      a a     G    C    C       Uc   c  gccaa        u 
 gggaag c cuGGA GCAG GGUU AUCGAUC  uuc ug     uuuuuugu u
 |||||| | ||||| |||| |||| |||||||  ||| ||     |||||||| a
 uccuuc g GACCU CGUC CCAA UAGCUag  aag ac     aaaaagca g
u      - c     A    U    A       cc   u  -----        c 

Annotation confidence High

Genome context

CM000348.2: 5079325-5079431 [+]

Mature ptc-miR162a-5p

• Accession: MIMAT0055573
• Description: Populus trichocarpa ptc-miR162a-5p mature miRNA
• Sequence: 13 - GGAGGCAGCGGUUCAUCGAUCU - 34
• Evidence: experimental ; unknown

Mature ptc-miR162a-3p

• Accession: MIMAT0001915
• Description: Populus trichocarpa ptc-miR162a-3p mature miRNA
• Sequence: 78 - UCGAUAAACCUCUGCAUCCAG - 98
• Evidence: experimental ; cloned [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203