Stem-loop ptc-MIR397c

Accession

MI0002334

Description

Populus trichocarpa ptc-MIR397c precursor miRNA

Literature search

2 open access papers mention ptc-MIR397c
(3 sentences)

Sequence

caaguuuaguUCAAUGAGUGGAGCUUUGAUGacaauuuguuuuaaaagcucuacuguauucgaacaauaug
........(((((((((((((((((((...((((...))))...))))))))))).)))).))))......

Structure

caaguuua    -    -           GAU    a 
        guUC AAUG AGUGGAGCUUU   Gaca  
        |||| |||| |||||||||||   |||| u
        caag uuau ucaucucgaaa   uugu  
--guauaa    c    g           auu    u 

Annotation confidence Not enough data

Genome context

CM000340.2: 2949324-2949394 [-]

Mature ptc-miR397c

• Accession: MIMAT0002040
• Description: Populus trichocarpa ptc-miR397c mature miRNA
• Sequence: 11 - UCAAUGAGUGGAGCUUUGAUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604