Stem-loop ptc-MIR160g

Accession

MI0002207

Description

Populus trichocarpa ptc-MIR160g precursor miRNA

Literature search

6 open access papers mention ptc-MIR160g
(22 sentences)

Sequence

167 reads, 3.0 reads per million, 9 experiments

gggaucaaucUGCCUGGCUCCCUGGAUGCCAacuaagaaauuugucgaguggucuugacucuucauagUUGGCAUCAGAGGAGUCAUGCagguccaac
.((((....((((.((((((((((.((((((((((.(((....((((((....))))))..))).))))))))))))).))))))).))))))))...

Structure

--g    caau    C       -   G          a   auuu      u 
   ggau    cUGC UGGCUCC CUG AUGCCAacua gaa    gucgag g
   ||||    |||| ||||||| ||| |||||||||| |||    ||||||  
   ccug    gaCG ACUGAGG GAC UACGGUUgau cuu    caguuc g
caa    ----    U       A   -          a   --cu      u 

Annotation confidence Medium

Genome context

CM000350.2: 13103115-13103212 [-]

Mature ptc-miR160g-5p

• Accession: MIMAT0001913
• Description: Populus trichocarpa ptc-miR160g-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGGAUGCCA - 31
• Evidence: not_experimental

Mature ptc-miR160g-3p

• Accession: MIMAT0055572
• Description: Populus trichocarpa ptc-miR160g-3p mature miRNA
• Sequence: 69 - UUGGCAUCAGAGGAGUCAUGC - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203