Stem-loop ptc-MIR169d

Accession

MI0002254

Description

Populus trichocarpa ptc-MIR169d precursor miRNA

Literature search

9 open access papers mention ptc-MIR169d
(13 sentences)

Sequence

1369 reads, 23.0 reads per million, 9 experiments

gagucgaaugCAGCCAAGGAUGACUUGCCGGcauuuccuccuaaguagcgagcccggcaaggcuucuauuuggcacgcccggccGGCGGGUUGUCCUUGGCUAUAUuuggu
...(((((((.(((((((((((((((((((((........((((((((.(((((......)))))))))))))........))))))))))))))))))))).))))))).

Structure

gag       C                     auuuccuc        c     cg 
   ucgaaug AGCCAAGGAUGACUUGCCGGc        cuaaguag gagcc  g
   ||||||| |||||||||||||||||||||        |||||||| |||||   
   gguuUAU UCGGUUCCUGUUGGGCGGccg        gguuuauc uucgg  c
--u       A                     gcccgcac        -     aa 

Annotation confidence High

Genome context

CM000342.2: 5569290-5569400 [-]

Mature ptc-miR169d-5p

• Accession: MIMAT0001960
• Description: Populus trichocarpa ptc-miR169d-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGG - 31
• Evidence: not_experimental

Mature ptc-miR169d-3p

• Accession: MIMAT0055601
• Description: Populus trichocarpa ptc-miR169d-3p mature miRNA
• Sequence: 85 - GGCGGGUUGUCCUUGGCUAUAU - 106
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604