Stem-loop ptc-MIR399i

Accession

MI0002346

Description

Populus trichocarpa ptc-MIR399i precursor miRNA

Literature search

4 open access papers mention ptc-MIR399i
(10 sentences)

Sequence

77 reads, 1.0 reads per million, 8 experiments

aaaccaguuguaGGGUACCUCUUACUUGGCAAGcaauggugauuguugcaaacauugcagaauuugaucucggugucuUGCCAAAGGAGAGUUGCCCUAugacuguuu
....(((((((((((((.(((((..((((((((..((.(.(((((((((((...))))))....))))).).))..))))))))..))))).)))))))))))))...

Structure

aaac             C     AC        ca  g u     ----      a 
    caguuguaGGGUA CUCUU  UUGGCAAG  au g gauug    uugcaa  
    ||||||||||||| |||||  ||||||||  || | |||||    |||||| c
    gucaguAUCCCGU GAGAG  AACCGUuc  ug c cuagu    gacguu  
-uuu             U     GA        ug  g u     uuaa      a 

Annotation confidence High

Genome context

CM000348.2: 13767450-13767557 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR399i

Mature ptc-miR399i-5p

• Accession: MIMAT0055641
• Description: Populus trichocarpa ptc-miR399i-5p mature miRNA
• Sequence: 13 - GGGUACCUCUUACUUGGCAAG - 33
• Evidence: experimental ; unknown

Mature ptc-miR399i-3p

• Accession: MIMAT0002052
• Description: Populus trichocarpa ptc-miR399i-3p mature miRNA
• Sequence: 79 - UGCCAAAGGAGAGUUGCCCUA - 99
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604