Stem-loop ptc-MIR319a

Accession

MI0002296

Description

Populus trichocarpa ptc-MIR319a precursor miRNA

Literature search

11 open access papers mention ptc-MIR319a
(42 sentences)

Sequence

7975361 reads, 135200.0 reads per million, 9 experiments

uaauagcuaagAGAGCUUUCUUCAGUCCACUCaugggugguaguaggauuuaauuagcugccgacucauucauccaaauacugaguuaaaggacaaggagauuacccaguaaaugagugaaugaugcgggagacaaauugaauccuaagcuuccuguacUUGGACUGAAGGGAGCUCCCUUuccuuuu
....((..(((.(((((((((((((((((...(((((.(((..((((((((((((.(((.(((..((((((((.((..(((((.((.................)).)))))..)).))))))))..))).)).).)))))))))))).))).)))))...))))))))))))))))).)))..))...

Structure

uaau  cu   A                 CUC     u   ag            a -  g   ac        c  aa     a  uaaagga 
    ag  aag GAGCUUUCUUCAGUCCA   auggg ggu  uaggauuuaauu g cu ccg  ucauucau ca  uacug gu       c
    ||  ||| |||||||||||||||||   ||||| |||  |||||||||||| | || |||  |||||||| ||  ||||| ||       a
    uc  UUC CUCGAGGGAAGUCAGGU   ugucc ucg  auccuaaguuaa c ga ggc  aguaagug gu  augac ca       a
-uuu  cu   C                 Uca     u   -a            a a  g   gu        a  aa     c  uuagagg 

Annotation confidence High

Genome context

CM000337.2: 7887933-7888120 [-]

Mature ptc-miR319a-5p

• Accession: MIMAT0055620
• Description: Populus trichocarpa ptc-miR319a-5p mature miRNA
• Sequence: 12 - AGAGCUUUCUUCAGUCCACUC - 32
• Evidence: experimental ; unknown

Mature ptc-miR319a-3p

• Accession: MIMAT0002002
• Description: Populus trichocarpa ptc-miR319a-3p mature miRNA
• Sequence: 160 - UUGGACUGAAGGGAGCUCCCUU - 181
• Evidence: experimental ; cloned [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203