Stem-loop ptc-MIR172d

Accession

MI0002290

Description

Populus trichocarpa ptc-MIR172d precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

8 open access papers mention ptc-MIR172d
(43 sentences)

Sequence

gcauuggcggaugcggcaucaucaagauucacaagcuuuaaggcuugagugagagggguggcauacggucaccuccuuuagcaagcuuuaaggcuugagugagagggguggcauacggucaccuccuuuaguccaaaggguccuuuuuuaugGGAAUCUUGAUGAUGCUGCAUcggcaaaua
......((.(((((((((((((((((((((.((((((((((((((((...(((.((((((((.....)))))))))))...))))))))))))))))....(((((((((((.....)))))).)))))...((....)).((........))))))))))))))))))))))).)).....

Structure

gcauug  g                     acaagcuuuaaggcuugagugagagggguggcauacggucaccuccuuuagcaagcuuuaaggcuugagugagagggguggcauacggucaccuccuuuaguccaaagggu  uuu 
      gc gaugcggcaucaucaagauuc                                                                                                               cc   u
      || |||||||||||||||||||||                                                                                                               ||    
      cg cUACGUCGUAGUAGUUCUAAG                                                                                                               Gg   u
-auaaa  g                     ---------------------------------------------------------------------------------------------------------------  uau 

Annotation confidence Not enough data

Genome context

CM000337.2: 24216475-24216656 [+]

Mature ptc-miR172d

• Accession: MIMAT0001996
• Description: Populus trichocarpa ptc-miR172d mature miRNA
• Sequence: 153 - GGAAUCUUGAUGAUGCUGCAU - 173
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203