Stem-loop ptc-MIR397a

Accession

MI0002332

Description

Populus trichocarpa ptc-MIR397a precursor miRNA

Literature search

5 open access papers mention ptc-MIR397a
(7 sentences)

Sequence

313 reads, 5.0 reads per million, 8 experiments

uggagaaccaUCAUUGAGUGCAGCGUUGAUGaaauccuccauuuugugcuauuaaacuguuaccaacccuuuauggggcauggcaucauuucaccagcgcugcauucaaucauguuuuuc
..(((((.(((.((((((((((((((((.((((((...(((...(((.((((.(((..(((...)))..))))))).))))))....)))))).)))))))))))))))).))).)))))

Structure

ug     c   C                A      -ccu   uuu   g    u   cu   a 
  gagaa caU AUUGAGUGCAGCGUUG UGaaau    cca   ugu cuau aaa  guu  
  ||||| ||| |||||||||||||||| ||||||    |||   ||| |||| |||  ||| c
  cuuuu gua uaacuuacgucgcgac acuuua    ggu   acg ggua uuu  caa  
--     u   c                c      cuac   ---   g    -   cc   c 

Annotation confidence Not enough data

Genome context

CM000347.2: 4146730-4146849 [+]

Mature ptc-miR397a-5p

• Accession: MIMAT0002038
• Description: Populus trichocarpa ptc-miR397a-5p mature miRNA
• Sequence: 11 - UCAUUGAGUGCAGCGUUGAUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604