Stem-loop ptc-MIR169j

Accession

MI0002260

Description

Populus trichocarpa ptc-MIR169j precursor miRNA

Literature search

9 open access papers mention ptc-MIR169j
(16 sentences)

Sequence

3258 reads, 54.0 reads per million, 9 experiments

ucuuguuugaUAGCCAAGGAUGACUUGCCUGcuacuugcaagaguuucugcaaagagaucagaaccaaauaugcauggaauuauauguaaugaaacucuuguuugauugccAGGCAGUCUCCUUGGCUAgccugaca
...((((...((((((((((.((((.((((((.....(((((((((((.......................((((((......))))))..)))))))))))......).)))))))))))))))))))....))))

Structure

ucu    -uga          U    U     - -uacuu           ugcaaagagaucagaaccaaaua      ga 
   uguu    UAGCCAAGGA GACU GCCUG c      gcaagaguuuc                       ugcaug  a
   ||||    |||||||||| |||| ||||| |      |||||||||||                       ||||||   
   acag    AUCGGUUCCU CUGA CGGAc g      uguucucaaag                       auguau  u
---    uccg          -    -     c uuaguu           ---------------------ua      au 

Annotation confidence High

Genome context

CM000337.2: 31302159-31302295 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR169j

Mature ptc-miR169j-5p

• Accession: MIMAT0001966
• Description: Populus trichocarpa ptc-miR169j-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUG - 31
• Evidence: not_experimental

Mature ptc-miR169j-3p

• Accession: MIMAT0055605
• Description: Populus trichocarpa ptc-miR169j-3p mature miRNA
• Sequence: 112 - AGGCAGUCUCCUUGGCUA - 129
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604