Stem-loop ptc-MIR166j

Accession

MI0002227

Description

Populus trichocarpa ptc-MIR166j precursor miRNA

Literature search

6 open access papers mention ptc-MIR166j
(22 sentences)

Sequence

27335248 reads, 385920.0 reads per million, 9 experiments

ucuuuuuugaggGGAAUGUUGUCUGGCUCGAGGacuuuuuguucaucaaucuaaucgaacuuucuaccuguagaucuaguaucuuauuuaagauugaucacguauuaggguugUCGGACCAGGCUUCAUUCCCCccaaucauu
......(((.((((((((..((((((.((((.((((((......(((((((((((.(((((.((((....))))...))).))..)))..))))))))........)))))).)))).))))))..)))))))).))).....

Structure

ucuuuu   a        UU      C    G      --uuguuc        --   -c  -   --u    c 
      uug ggGGAAUG  GUCUGG UCGA Gacuuu        aucaaucu  aau  ga acu   ucua c
      ||| ||||||||  |||||| |||| ||||||        ||||||||  |||  || |||   ||||  
      aac CCCCUUAC  CGGACC GGCU uuggga        uaguuaga  uua  cu uga   agau u
-uuacu   c        UU      A    g      uuaugcac        au   uu  a   ucu    g 

Annotation confidence High

Genome context

CM000350.2: 7398187-7398329 [+]

Mature ptc-miR166j-5p

• Accession: MIMAT0055588
• Description: Populus trichocarpa ptc-miR166j-5p mature miRNA
• Sequence: 13 - GGAAUGUUGUCUGGCUCGAGG - 33
• Evidence: experimental ; unknown

Mature ptc-miR166j-3p

• Accession: MIMAT0001933
• Description: Populus trichocarpa ptc-miR166j-3p mature miRNA
• Sequence: 114 - UCGGACCAGGCUUCAUUCCCC - 134
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604