Stem-loop ptc-MIR169q

Accession

MI0002267

Description

Populus trichocarpa ptc-MIR169q precursor miRNA

Literature search

9 open access papers mention ptc-MIR169q
(13 sentences)

Sequence

37244 reads, 655.0 reads per million, 9 experiments

ucuuguuaguUAGCCAAGGACGACUUGCCuguuccuagcaauuugggauuugcccuggacuaagaggcaggacccucauuccggguuucAGGCAGUCUCCUUGGCUAgguugaca
...(((((.(((((((((((.((((.(((((..(((.(.(((..(((.((((((((......)).)))))).)))..)))).)))...))))))))))))))))))))..)))))

Structure

ucu     -g           C    U     -uu   a c   uu   a      -  gg 
   uguua  uUAGCCAAGGA GACU GCCug   ccu g aau  ggg uuugcc cu  a
   |||||  ||||||||||| |||| |||||   ||| | |||  ||| |||||| ||   
   acagu  gAUCGGUUCCU CUGA CGGAc   ggg c uua  ccc ggacgg ga  c
---     ug           -    -     uuu   c -   cu   a      a  au 

Annotation confidence Medium

Genome context

CM000337.2: 27741711-27741825 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR169q

Mature ptc-miR169q-5p

• Accession: MIMAT0001973
• Description: Populus trichocarpa ptc-miR169q-5p mature miRNA
• Sequence: 11 - UAGCCAAGGACGACUUGCC - 29
• Evidence: not_experimental

Mature ptc-miR169q-3p

• Accession: MIMAT0055609
• Description: Populus trichocarpa ptc-miR169q-3p mature miRNA
• Sequence: 90 - AGGCAGUCUCCUUGGCUA - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604