Stem-loop ptc-MIR169s

Accession

MI0002269

Description

Populus trichocarpa ptc-MIR169s precursor miRNA

Literature search

9 open access papers mention ptc-MIR169s
(13 sentences)

Sequence

2151 reads, 36.0 reads per million, 9 experiments

agagugugauUCAGCCAAGGAUGACUUGCCGgcagcagguaagagcaaagcuccguuuuuggaaguucaaggauaucuuaacuuuuccggccGGCAAGCUGUCCUUGGCUACAUuguacu
..((((((((..(((((((((((.(((((((((.........((((...))))......((((((((.(((.....)))))))..))))))))))))).)))))))))))..))))))))

Structure

ag        UC           A         agcagguaagagcaaagcuccguuuu    --    c   g 
  agugugau  AGCCAAGGAUG CUUGCCGgc                          ugga  aguu aag a
  ||||||||  ||||||||||| |||||||||                          ||||  |||| ||| u
  ucauguUA  UCGGUUCCUGU GAACGGccg                          gccu  ucaa uuc a
--        CA           C         --------------------------    uu    -   u 

Annotation confidence Medium

Genome context

Unknown

Mature ptc-miR169s-5p

• Accession: MIMAT0001975
• Description: Populus trichocarpa ptc-miR169s-5p mature miRNA
• Sequence: 11 - UCAGCCAAGGAUGACUUGCCG - 31
• Evidence: not_experimental

Mature ptc-miR169s-3p

• Accession: MIMAT0055610
• Description: Populus trichocarpa ptc-miR169s-3p mature miRNA
• Sequence: 93 - GGCAAGCUGUCCUUGGCUACAU - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604