Stem-loop ptc-MIR172e

Accession

MI0002291

Description

Populus trichocarpa ptc-MIR172e precursor miRNA

Literature search

8 open access papers mention ptc-MIR172e
(33 sentences)

Sequence

2201 reads, 38.0 reads per million, 9 experiments

auauuggccgauGCGGCAGCAUCAAGAUUCACAaacuuuaaggcuugaguuggggugguacacgguccccuccuuuacucgaaagguuccuuaauuucugaugGGAAUCUUGAUGAUGCUGCAUcggcaaaua
.((((.((((((((((((.(((((((((((.((....((((((.((((((.((((.((........)).))))...))))))......)))))).......)).))))))))))).)))))))))))).))))

Structure

a    g            G           A  ---aacu      -----c      --u    u  uac 
 uauu gccgauGCGGCA CAUCAAGAUUC CA       uuaagg      uugagu   gggg gg   a
 |||| |||||||||||| ||||||||||| ||       ||||||      ||||||   |||| ||    
 auaa cggcUACGUCGU GUAGUUCUAAG gu       aauucc      agcuca   ccuc cc   c
-    a            A           G  agucuuu      uuggaa      uuu    c  ugg 

Annotation confidence High

Genome context

CM000345.2: 4502775-4502907 [+]

Mature ptc-miR172e-5p

• Accession: MIMAT0055619
• Description: Populus trichocarpa ptc-miR172e-5p mature miRNA
• Sequence: 13 - GCGGCAGCAUCAAGAUUCACA - 33
• Evidence: experimental ; unknown

Mature ptc-miR172e-3p

• Accession: MIMAT0001997
• Description: Populus trichocarpa ptc-miR172e-3p mature miRNA
• Sequence: 104 - GGAAUCUUGAUGAUGCUGCAU - 124
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203