Stem-loop ptc-MIR171h

Accession

MI0002284

Description

Populus trichocarpa ptc-MIR171h precursor miRNA

Literature search

7 open access papers mention ptc-MIR171h
(12 sentences)

Sequence

1140 reads, 19.0 reads per million, 9 experiments

gaaagugggggauGUUGGGAUGGCUCAAUCAUaucaaaucucccaaacuaugauguugggucguuuaaucUGAUUGAGCCGUGCCAAUAUCacacuaacu
...((((...((((((((.((((((((((((.((.((((..(((((.(......))))))..)))).)).)))))))))))).)))))))).))))....

Structure

-gaa    ggg        G            U  c    cu     a ua 
    agug   gauGUUGG AUGGCUCAAUCA au aaau  cccaa c  u
    ||||   |||||||| |||||||||||| || ||||  ||||| |   
    ucac   CUAUAACC UGCCGAGUUAGU ua uuug  ggguu g  g
ucaa    --a        G            c  a    cu     - ua 

Annotation confidence Medium

Genome context

CM000351.2: 11748061-11748160 [+]

Mature ptc-miR171h-5p

• Accession: MIMAT0022903
• Description: Populus trichocarpa ptc-miR171h-5p mature miRNA
• Sequence: 14 - GUUGGGAUGGCUCAAUCAU - 32
• Evidence: experimental ; miRNAseq [3]

Mature ptc-miR171h-3p

• Accession: MIMAT0001990
• Description: Populus trichocarpa ptc-miR171h-3p mature miRNA
• Sequence: 71 - UGAUUGAGCCGUGCCAAUAUC - 91
• Evidence: experimental ; cloned [1], miRNAseq [3]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


3. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034