Stem-loop ptc-MIR164b

Accession

MI0002213

Description

Populus trichocarpa ptc-MIR164b precursor miRNA

Literature search

8 open access papers mention ptc-MIR164b
(38 sentences)

Sequence

95791 reads, 1579.0 reads per million, 9 experiments

gugagcaagaUGGAGAAGCAGGGCACGUGCAcuacuaacucaugcacacagagagggagacgcauuucuugcuggaguuacgaguuacgacucuuaccuacuauugauuuuguuagcuccagugaguuaguuauuCAUGUGCCUGUCUUCCUCAUCaugauc
.....((.(((((.((((..(((((((((....((((((((...........((((((......))))))((((((((((((((........................)))).))))))))))))))))))....)))))))))..)))).))))).))...

Structure

gugag  a     A    CA         CAcu        augcacacagagagggagacgcauuucuu          -    uuacgacucuu 
     ca gaUGG GAAG  GGGCACGUG    acuaacuc                             gcuggaguua cgag           a
     || ||||| ||||  |||||||||    ||||||||                             |||||||||| ||||            
     gu CUACU CUUC  UCCGUGUAC    ugauugag                             ugaccucgau guuu           c
--cua  a     C    UG         uuau        -----------------------------          u    uaguuaucauc 

Annotation confidence High

Genome context

CM000342.2: 8032134-8032295 [+]

Mature ptc-miR164b-5p

• Accession: MIMAT0001919
• Description: Populus trichocarpa ptc-miR164b-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: experimental ; cloned [1]

Mature ptc-miR164b-3p

• Accession: MIMAT0055576
• Description: Populus trichocarpa ptc-miR164b-3p mature miRNA
• Sequence: 136 - CAUGUGCCUGUCUUCCUCAUC - 156
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203