Stem-loop ptc-MIR390a

Accession

MI0002305

Description

Populus trichocarpa ptc-MIR390a precursor miRNA

Literature search

5 open access papers mention ptc-MIR390a
(17 sentences)

Sequence

41435 reads, 708.0 reads per million, 9 experiments

agaaucuguuAAGCUCAGGAGGGAUAGCGCCaugagcaugacaaagucuauguuugaguuaaucucaacaaaaucaauccagucaucaguggCGCUAUCUAUCCUGAGUUCUauggguu
..(((((((..(((((((((.((((((((((((..(.(((((........((((.(((.....)))))))...........)))))).)))))))))))).)))))))))..)))))))

Structure

ag       uA         G            ga c     ---aaagucua    u   u 
  aaucugu  AGCUCAGGA GGAUAGCGCCau  g augac           uguu gag u
  |||||||  ||||||||| ||||||||||||  | |||||           |||| ||| a
  uugggua  UUGAGUCCU UCUAUCGCggug  c uacug           acaa cuc a
--       UC         A            -a -     accuaacuaaa    -   u 

Annotation confidence High

Genome context

CM000337.2: 27693951-27694069 [+]

Mature ptc-miR390a-5p

• Accession: MIMAT0002011
• Description: Populus trichocarpa ptc-miR390a-5p mature miRNA
• Sequence: 11 - AAGCUCAGGAGGGAUAGCGCC - 31
• Evidence: not_experimental

Mature ptc-miR390a-3p

• Accession: MIMAT0055625
• Description: Populus trichocarpa ptc-miR390a-3p mature miRNA
• Sequence: 93 - CGCUAUCUAUCCUGAGUUCU - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604