Stem-loop ptc-MIR169u

Accession

MI0002271

Description

Populus trichocarpa ptc-MIR169u precursor miRNA

Literature search

9 open access papers mention ptc-MIR169u
(13 sentences)

Sequence

36901 reads, 650.0 reads per million, 9 experiments

gaggguugggUAGCCAAGGACGACUUGCCuauuuccuccaugggguccugaaaagaaugaaauacugucguucagagcucauugguaggguucaUAGGCAGUCUCCUUUGGCUAUCcuaacu
...(((((((((((((((((.((((.((((((.(((((((..((((.(((((..((..(.....)..)).))))).))))..))).))))...))))))))))))).))))))).)))))))

Structure

gag       -       -   C    U      --u    -   ug    c     aa  au a 
   gguuggg UAGCCAA GGA GACU GCCuau   uccu cca  gggu cugaa  ga  g a
   ||||||| ||||||| ||| |||| ||||||   |||| |||  |||| |||||  ||  | a
   ucaaucC AUCGGUU CCU CUGA CGGAUa   ggga ggu  cucg gacuu  cu  c u
---       U       U   -    -      cuu    u   ua    a     -g  gu a 

Annotation confidence Medium

Genome context

CM000351.2: 12074209-12074330 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR169u

Mature ptc-miR169u-5p

• Accession: MIMAT0001977
• Description: Populus trichocarpa ptc-miR169u-5p mature miRNA
• Sequence: 11 - UAGCCAAGGACGACUUGCC - 29
• Evidence: experimental ; miRNAseq [2]

Mature ptc-miR169u-3p

• Accession: MIMAT0022900
• Description: Populus trichocarpa ptc-miR169u-3p mature miRNA
• Sequence: 95 - UAGGCAGUCUCCUUUGGCUAUC - 116
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034