Stem-loop ptc-MIR156d

Accession

MI0002187

Description

Populus trichocarpa ptc-MIR156d precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

8 open access papers mention ptc-MIR156d
(77 sentences)

Sequence

guaagugaguUGACAGAAGAGAGUGAGCACacaggguacuuucuugcaugacguucaugcuugaagcuuugcgugcccacccucuaucugucaccccauca
....(((.(.(((((((((((.(((.((((.((((((...(((..((((((...))))))..))))))))).)))).))).)))).))))))).).)))..

Structure

guaa   a u       -    A   A    a      acu   uu      c 
    gug g UGACAGA AGAG GUG GCAC cagggu   uuc  gcauga  
    ||| | ||||||| |||| ||| |||| ||||||   |||  |||||| g
    uac c acugucu ucuc cac cgug guuucg   aag  cguacu  
--ac   c c       a    c   c    c      ---   uu      u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR156d

• Accession: MIMAT0001893
• Description: Populus trichocarpa ptc-miR156d mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203