Stem-loop ptc-MIR166e

Accession

MI0002222

Description

Populus trichocarpa ptc-MIR166e precursor miRNA

Literature search

8 open access papers mention ptc-MIR166e
(26 sentences)

Sequence

27280845 reads, 384779.0 reads per million, 9 experiments

uaacuguugaggGGAUUGUCGUCUGGUUCGAUGUcauucaugagaagcucaaacauaaacguaauauugaaugauuUCGGACCAGGCUUCAUUCCCCccaacaaug
....(((((.(((((.((..(((((((((((.((((((((((((...))))................)))))))).)))))))))))..)).))))).)))))...

Structure

uaac     a     U  UC           U        ----------------    a 
    uguug ggGGA UG  GUCUGGUUCGA GUcauuca                ugag  
    ||||| ||||| ||  ||||||||||| ||||||||                |||| a
    acaac CCCCU AC  CGGACCAGGCU uaguaagu                acuc  
-gua     c     U  UU           u        uauaaugcaaauacaa    g 

Annotation confidence High

Genome context

CM000341.2: 22785312-22785417 [-]

Mature ptc-miR166e-5p

• Accession: MIMAT0055583
• Description: Populus trichocarpa ptc-miR166e-5p mature miRNA
• Sequence: 13 - GGAUUGUCGUCUGGUUCGAUGU - 34
• Evidence: experimental ; unknown

Mature ptc-miR166e-3p

• Accession: MIMAT0001928
• Description: Populus trichocarpa ptc-miR166e-3p mature miRNA
• Sequence: 77 - UCGGACCAGGCUUCAUUCCCC - 97
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604