Stem-loop ptc-MIR319c

Accession

MI0002298

Description

Populus trichocarpa ptc-MIR319c precursor miRNA

Literature search

10 open access papers mention ptc-MIR319c
(33 sentences)

Sequence

7914048 reads, 134235.0 reads per million, 9 experiments

aaugguuuaagAGAGCUUUCUUCAGUCCACUCauggacgggcgaaggguuuggauuagcugccgacucauucauucaaacacaguagaaauuaagggagcaguauggcugcuauugugaaugugugaaugaugcgggagauaaauuucauccuuuucuucucugugcUUGGACUGAAGGGAGCUCCCUUuaaucgu
.((((((.(((.(((((((((((((((((..((((((.(((.(((((((.....(((.((.(((..((((((((.((..((((((............((((((...))))))))))))..)).))))))))..))).)).))).....))))))).))).))))))..))))))))))))))))).))).))))))

Structure

a      u   A                 CU      c   c       uugga   g  g   ac        u  aa      agaaauuaaggg      a 
 augguu aag GAGCUUUCUUCAGUCCA  Caugga ggg gaagggu     uua cu ccg  ucauucau ca  cacagu            agcagu  
 |||||| ||| |||||||||||||||||  |||||| ||| |||||||     ||| || |||  |||||||| ||  ||||||            |||||| u
 ugcuaa UUC CUCGAGGGAAGUCAGGU  gugucu uuc uuuccua     aau ga ggc  aguaagug gu  guguua            ucgucg  
-      u   C                 Uc      c   u       cuuua   a  g   gu        u  aa      ------------      g 

Annotation confidence High

Genome context

CM000349.2: 15551280-15551475 [+]

Mature ptc-miR319c-5p

• Accession: MIMAT0055621
• Description: Populus trichocarpa ptc-miR319c-5p mature miRNA
• Sequence: 12 - AGAGCUUUCUUCAGUCCACUC - 32
• Evidence: experimental ; unknown

Mature ptc-miR319c-3p

• Accession: MIMAT0002004
• Description: Populus trichocarpa ptc-miR319c-3p mature miRNA
• Sequence: 168 - UUGGACUGAAGGGAGCUCCCUU - 189
• Evidence: experimental ; cloned [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203