Stem-loop ptc-MIR393c

Accession

MI0002311

Description

Populus trichocarpa ptc-MIR393c precursor miRNA

Literature search

4 open access papers mention ptc-MIR393c
(7 sentences)

Sequence

17257 reads, 289.0 reads per million, 9 experiments

gcuggaguguUCCAAAGGGAUCGCAUUGAUCUaaugacucucgaugucuaaaucauauuaauguuuaguuuuuucguuggAUCAUGCGAUCCCUUAGGAAUUuucca
..(((((.(((((.((((((((((((.((((((((((.....((...(((((.(((....))))))))...)))))))))))))))))))))))).))))).)))))

Structure

gc     u     A            U          cucuc  ugu     u   a 
  uggag guUCC AAGGGAUCGCAU GAUCUaauga     ga   cuaaa cau u
  ||||| ||||| |||||||||||| ||||||||||     ||   ||||| |||  
  accuu UAAGG UUCCCUAGCGUA CUAgguugcu     uu   gauuu gua u
--     U     A            -          -----  uuu     -   a 

Annotation confidence High

Genome context

CM000351.2: 13166756-13166862 [+]

Mature ptc-miR393c-5p

• Accession: MIMAT0002017
• Description: Populus trichocarpa ptc-miR393c-5p mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUCU - 32
• Evidence: not_experimental

Mature ptc-miR393c-3p

• Accession: MIMAT0055628
• Description: Populus trichocarpa ptc-miR393c-3p mature miRNA
• Sequence: 81 - AUCAUGCGAUCCCUUAGGAAUU - 102
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604