Stem-loop ptc-MIR166c

Accession

MI0002220

Description

Populus trichocarpa ptc-MIR166c precursor miRNA

Literature search

6 open access papers mention ptc-MIR166c
(22 sentences)

Sequence

27334238 reads, 385904.0 reads per million, 9 experiments

cuuuuuuugaggGGAAUGUUGUCUGGCUCGAGGacucuuucuugaucagucugaucaaguguucuaucuuuagaucuaauaucuuagaucauguguuagggucgUCGGACCAGGCUUCAUUCCCCccaauuauu
......(((.((((((((..((((((.((((.((((((..((((((((...)))))))).............(((((((....))))))).......)))))).)))).))))))..)))))))).))).....

Structure

cuuuuu   a        UU      C    G      ------------------------------------uu        g 
      uug ggGGAAUG  GUCUGG UCGA Gacucu                                      cuugauca  
      ||| ||||||||  |||||| |||| ||||||                                      |||||||| u
      aac CCCCUUAC  CGGACC GGCU cuggga                                      gaacuagu  
-uuauu   c        UU      A    g      uuguguacuagauucuauaaucuagauuucuaucuugu        c 

Annotation confidence High

Genome context

CM000338.2: 13513492-13513625 [+]

Mature ptc-miR166c-5p

• Accession: MIMAT0055581
• Description: Populus trichocarpa ptc-miR166c-5p mature miRNA
• Sequence: 13 - GGAAUGUUGUCUGGCUCGAGG - 33
• Evidence: experimental ; unknown

Mature ptc-miR166c-3p

• Accession: MIMAT0001926
• Description: Populus trichocarpa ptc-miR166c-3p mature miRNA
• Sequence: 105 - UCGGACCAGGCUUCAUUCCCC - 125
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604