Stem-loop ptc-MIR399e

Accession

MI0002349

Description

Populus trichocarpa ptc-MIR399e precursor miRNA

Literature search

4 open access papers mention ptc-MIR399e
(10 sentences)

Sequence

235 reads, 4.0 reads per million, 9 experiments

aacuaguuaaaUGGCUUCUCUUCUUUGGCAGGUGaugguauagauuacaacuuauagcuuuaaucuaguauucaguuaccCGCCAAAGGAGAGUUGCCCUCuaacuucc
....(((((...(((..((((((((((((.(((((((((((((((((...((...))...)))))).)))))..)))))).))))))))))))..)))...)))))...

Structure

aacu     aaU   UU            A      --     -      caa  u 
    aguua   GGC  CUCUUCUUUGGC GGUGau  gguau agauua   cu  
    |||||   |||  |||||||||||| ||||||  ||||| ||||||   || a
    ucaau   CCG  GAGAGGAAACCG ccauug  uuaug ucuaau   ga  
-ccu     CUC   UU            C      ac     a      uuc  u 

Annotation confidence High

Genome context

Unknown

Mature ptc-miR399e-5p

• Accession: MIMAT0055642
• Description: Populus trichocarpa ptc-miR399e-5p mature miRNA
• Sequence: 12 - UGGCUUCUCUUCUUUGGCAGGUG - 34
• Evidence: experimental ; unknown

Mature ptc-miR399e-3p

• Accession: MIMAT0002055
• Description: Populus trichocarpa ptc-miR399e-3p mature miRNA
• Sequence: 81 - CGCCAAAGGAGAGUUGCCCUC - 101
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604