Stem-loop ptc-MIR164e

Accession

MI0002216

Description

Populus trichocarpa ptc-MIR164e precursor miRNA

Literature search

8 open access papers mention ptc-MIR164e
(40 sentences)

Sequence

154388 reads, 2560.0 reads per million, 9 experiments

gugagcaagaUGGAGAAGCAGGGCACGUGCAuuacuaacucaugcacacagagugagagagacauuucuugcuggaguuaugacucuuaccuacuauagauuguguuggcuucagcgaguuaguucuuCAUGUGCCUGUCUUCCCCAUCaugauc
.....((.(((((.((((..(((((((((....((((((((...(((.....)))(((((....))))).((((((((((..(((((..........)))..))..))))))))))))))))))....)))))))))..)))).))))).))...

Structure

gugag  a     A    CA         CAuu        augcacacagagugagagagacauuucuu          ug  --   uacc 
     ca gaUGG GAAG  GGGCACGUG    acuaacuc                             gcuggaguua  ac  ucu    u
     || ||||| ||||  |||||||||    ||||||||                             ||||||||||  ||  |||     
     gu CUACC CUUC  UCCGUGUAC    ugauugag                             cgacuucggu  ug  aga    a
--cua  a     C    UG         uucu        -----------------------------          ug  uu   uauc 

Annotation confidence High

Genome context

CM000352.2: 12933923-12934077 [+]

Mature ptc-miR164e-5p

• Accession: MIMAT0001922
• Description: Populus trichocarpa ptc-miR164e-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: experimental ; cloned [1]

Mature ptc-miR164e-3p

• Accession: MIMAT0055578
• Description: Populus trichocarpa ptc-miR164e-3p mature miRNA
• Sequence: 129 - CAUGUGCCUGUCUUCCCCAUC - 149
• Evidence: experimental ; unknown

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


3. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


4. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203