Stem-loop ptc-MIR169i

Accession

MI0002259

Description

Populus trichocarpa ptc-MIR169i precursor miRNA

Literature search

10 open access papers mention ptc-MIR169i
(22 sentences)

Sequence

4894 reads, 81.0 reads per million, 9 experiments

ucuuguuuggUAGCCAAGGAUGACUUGCCUGcuccauuguaggagguuuccgaaaaaaugcagacauguauaauuucgaaaccccuguuucguuucaGGCAGUCUCCUUGGCUAACUugacug
....(((.((((((((((((.((((.(((((........((((.((((((.((((..(((((....)))))..))))))))))))))........)))))))))))))))))).))).)))..

Structure

ucuu   u   -         U    U     cuccauug    a      c    aa     g 
    guu ggU AGCCAAGGA GACU GCCUG        uagg gguuuc gaaa  augca a
    ||| ||| ||||||||| |||| |||||        |||| |||||| ||||  |||||  
    cag UCA UCGGUUCCU CUGA CGGac        gucc ccaaag cuuu  uaugu c
--gu   u   A         -    -     uuugcuuu    -      -    aa     a 

Annotation confidence High

Genome context

CM000337.2: 31302443-31302565 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR169i

Mature ptc-miR169i-5p

• Accession: MIMAT0001965
• Description: Populus trichocarpa ptc-miR169i-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUG - 31
• Evidence: not_experimental

Mature ptc-miR169i-3p

• Accession: MIMAT0055604
• Description: Populus trichocarpa ptc-miR169i-3p mature miRNA
• Sequence: 98 - GGCAGUCUCCUUGGCUAACU - 117
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604