Stem-loop ptc-MIR395i

Accession

MI0002323

Description

Populus trichocarpa ptc-MIR395i precursor miRNA

Literature search

5 open access papers mention ptc-MIR395i
(7 sentences)

Sequence

133 reads, 2.0 reads per million, 9 experiments

guguccccuagaGUUCCUCUGAGCACUUCAAUGgggaucuuccaucgaccugaaagaguauuaucauuccuaCUGAAGUGUUUGGGGGAACUCcugguguca
.((.(.((..((((((((((((((((((((.((((((((((.((......)).)))).........)))))).))))))))))))))))))))..)).).))

Structure

g  u c  ua                    A      ---------    c  uc 
 ug c cc  gaGUUCCUCUGAGCACUUCA UGggga         ucuu ca  g
 || | ||  |||||||||||||||||||| ||||||         |||| ||   
 ac g gg  CUCAAGGGGGUUUGUGAAGU auccuu         agaa gu  a
-  u u  uc                    C      acuauuaug    a  cc 

Annotation confidence High

Genome context

CM000352.2: 13797871-13797972 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR395i

Mature ptc-miR395i-5p

• Accession: MIMAT0055635
• Description: Populus trichocarpa ptc-miR395i-5p mature miRNA
• Sequence: 13 - GUUCCUCUGAGCACUUCAAUG - 33
• Evidence: experimental ; unknown

Mature ptc-miR395i-3p

• Accession: MIMAT0002029
• Description: Populus trichocarpa ptc-miR395i-3p mature miRNA
• Sequence: 73 - CUGAAGUGUUUGGGGGAACUC - 93
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604