Stem-loop ptc-MIR395i

Accession

MI0002323

Description

Populus trichocarpa ptc-MIR395i precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

5 open access papers mention ptc-MIR395i
(7 sentences)

Sequence

guguccccuagaguuccucugagcacuucaauggggaucuuccaucgaccugaaagaguauuaucauuccuaCUGAAGUGUUUGGGGGAACUCcugguguca
.((.(.((..((((((((((((((((((((.((((((((((.((......)).)))).........)))))).))))))))))))))))))))..)).).))

Structure

g  u c  ua                    a      ---------    c  uc 
 ug c cc  gaguuccucugagcacuuca ugggga         ucuu ca  g
 || | ||  |||||||||||||||||||| ||||||         |||| ||   
 ac g gg  CUCAAGGGGGUUUGUGAAGU auccuu         agaa gu  a
-  u u  uc                    C      acuauuaug    a  cc 

Annotation confidence Not enough data

Genome context

CM000352.2: 13797871-13797972 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR395i

Mature ptc-miR395i

• Accession: MIMAT0002029
• Description: Populus trichocarpa ptc-miR395i mature miRNA
• Sequence: 73 - CUGAAGUGUUUGGGGGAACUC - 93
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604