Stem-loop ptc-MIR167g

Accession

MI0002241

Description

Populus trichocarpa ptc-MIR167g precursor miRNA

Literature search

6 open access papers mention ptc-MIR167g
(45 sentences)

Sequence

3075 reads, 53.0 reads per million, 9 experiments

cacuaucaguUGAAGCUGCCAGCAUGAUCUuaaccucccuccuuugucgaggaaagaacAGAUCAUGUGGCAGUUUCACCUGaagu
.(((.((((.(((((((((((.((((((((.......((((.......)))).......))))))))))))))))))).)))))))

Structure

c   a    u           G        uaaccuc    cu 
 acu ucag UGAAGCUGCCA CAUGAUCU       ccuc  u
 ||| |||| ||||||||||| ||||||||       ||||  u
 uga aGUC ACUUUGACGGU GUACUAGA       ggag  g
-   -    C           -        caagaaa    cu 

Annotation confidence High

Genome context

CM000344.2: 10561904-10561989 [+]

Mature ptc-miR167g-5p

• Accession: MIMAT0001947
• Description: Populus trichocarpa ptc-miR167g-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCU - 30
• Evidence: experimental ; miRNAseq [2]

Mature ptc-miR167g-3p

• Accession: MIMAT0022894
• Description: Populus trichocarpa ptc-miR167g-3p mature miRNA
• Sequence: 60 - AGAUCAUGUGGCAGUUUCACCUG - 82
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034